SNP Profiles of PA 156 [PER]   View Data

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 Key

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_Input profile
CCCTTTGGCCCCCCCCGGCCGGTTAATT
1._GC-05-137-3-39
GGCTTTGGCCCCCCCCCCGG_TTAATT
2._GC-05-137-3-39
GGCTTTGGCCCCCCCCCCGG_TTAATT
3._GC-05-137-3-39
GGCTTTGGCCCCCCCCCCGG_TTAATT
4._GC-05-137-3-39
GGCTTTGGCCCCCCCCCCGG_TTAATT
5._PA_156_[PER]
GG___CC_CCCC_GG____
6._GC-05-137-3-39
GGCTTTGGCCCCCCCCCCGG_TTAATT
7._RUQ_1531
GGCTTTGGCC__CCCCGG___TT
8._PA_156_[PER]
GG___CC_CCCC_GG____
9._PA_156_[PER]
GG___CC_CCCC_GG____
10._PA_156_[PER]
GG___CC_CCCC_GG____
11._PA_156_[PER]
GG___CC_CCCC_GG____
12._RUQ_1531
GG___CC_CCCC_GG____
13._PA_156_[PER]
GG___CC_CCCC_GG____
14._PA_156_[PER]
GG___CC_CCCC_GG____
15._RUQ_1531
GG________GG___TT
16._GC-05-138-3-40
GGCTTTAGCCCCTTCTCCCG_TTAACT
17._GC-05-138-3-40
GGCTTTAGCCCCTTCTCCCG_TTAACT
18._GC-05-138-3-40
GGCTTTAGCCCCTTCTCCCG_TTAACT
19._GC-05-138-3-40
GGCTTTAGCCCCTTCTCCCG_TTAACT
20._GC-05-138-3-40
GGCTTTAGCCCCTTCTCCCG_TTAACT
21._RUQ_1531
CCAG_GGGG_GGGG_CCGGAA_AA
22._PA_156_[PER]
GG___CC_TTCT_CG____
23._PA_156_[PER]
GG___CC_TTCT_CG____
24._PA_156_[PER]
GG___CC_TTCT_CG____
25._PA_156_[PER]
GG___CC_TTCT_CG____
26._PA_156_[PER]
GG___CC_TTCT_CG____
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_Input profile
CCCGCCTTAAGGAAGGAAGGCCACX_XX_X
1._GC-05-137-3-39
CCCGCCTTAAGGAACCAAGGCCACX_XX_X
2._GC-05-137-3-39
CCCGCCTTAAGGAACCAAGGCCACX_XX_X
3._GC-05-137-3-39
CCCGCCTTAAGGAACCAAGGCCACX_XX_X
4._GC-05-137-3-39
CCCGCCTTAAGGAACCAAGGCCACX_XX_X
5._PA_156_[PER]
CCCG__AA_AA_AA_CCACX_XX_X
6._GC-05-137-3-39
CCCGCCTTAAGGAACCAAGG_ACX_XX_X
7._RUQ_1531
CCCGCC_AAGGAACCAAGGCCACX_XX_X
8._PA_156_[PER]
CCCG__AA_AACCAA_CCACX_XX_X
9._PA_156_[PER]
CCCG__AA_AACCAA_CCACX_XX_X
10._PA_156_[PER]
CCCG__AA_AACCAA_CCACX_XX_X
11._PA_156_[PER]
CCCG__AA_AACCAA_CCACX_XX_X
12._RUQ_1531
CCCG__AA_AACCAA_CCACX_XX_X
13._PA_156_[PER]
CCCG__AA_AACCAA_CCACX_XX_X
14._PA_156_[PER]
CCCG__AA_AACCAA__ACX_XX_X
15._RUQ_1531
CCCG____AA____ACX_XX_X
16._GC-05-138-3-40
AACGCCCTAAGGAACCAAGGCCAAX_XX_X
17._GC-05-138-3-40
AACGCCCTAAGGAACCAAGGCCAAX_XX_X
18._GC-05-138-3-40
AACGCCCTAAGGAACCAAGGCCAAX_XX_X
19._GC-05-138-3-40
AACGCCCTAAGGAACCAAGGCCAAX_XX_X
20._GC-05-138-3-40
AACGCCCTAAGGAACCAAGG_AAX_XX_X
21._RUQ_1531
CCCGGGAAAAGGAAGGAAGGGGACX_XX_X
22._PA_156_[PER]
AACG__AA_AACCAA_CCAAX_XX_X
23._PA_156_[PER]
AACG__AA_AACCAA_CCAAX_XX_X
24._PA_156_[PER]
AACG__AA_AACCAA_CCAAX_XX_X
25._PA_156_[PER]
AACG__AA_AACCAA_CCAAX_XX_X
26._PA_156_[PER]
AACG__AA_AACCAA__AAX_XX_X

Input profile: PA_156_[PER] PA156[PER]

 
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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

1._PA_156_[PER] GC-05-137-3-39

84 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

2._PA_156_[PER] GC-05-137-3-39

84 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

3._PA_156_[PER] GC-05-137-3-39

84 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

4._PA_156_[PER] GC-05-137-3-39

84 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._PA_156_[PER]

83.3 %
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

6._PA_156_[PER] GC-05-137-3-39

83.3 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._PA_156_[PER] RUQ_1531

80 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._PA_156_[PER]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

9._PA_156_[PER]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

10._PA_156_[PER]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

11._PA_156_[PER]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

12._PA_156_[PER] RUQ_1531

76.9 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

13._PA_156_[PER]

76.9 %
13 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

14._PA_156_[PER]

75 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

15._PA_156_[PER] RUQ_1531

71.4 %
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

16._PA_156_[PER] GC-05-138-3-40

68 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._PA_156_[PER] GC-05-138-3-40

68 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

18._PA_156_[PER] GC-05-138-3-40

68 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

19._PA_156_[PER] GC-05-138-3-40

68 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

20._PA_156_[PER] GC-05-138-3-40

66.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

21._PA_156_[PER] RUQ_1531

59.1 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._PA_156_[PER]

57.7 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 3 > FP
 Dapeng Zhang, 2016

23._PA_156_[PER]

57.7 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 4
 Dapeng Zhang, 2016

24._PA_156_[PER]

57.7 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 5
 Dapeng Zhang, 2016

25._PA_156_[PER]

57.7 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 1 > FP
 Dapeng Zhang, 2016

26._PA_156_[PER]

54.2 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 2 > FP
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144